Genes, Gene Expression + DNA Biology
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Bioinformatics
The field of bioinformatics applies computer science and information technology to complex problems in the study of biological processes, such as the network of interactions between molecules within cells or the analysis of mutations in cancer.
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Biostatistics
Biostatistics applies statistical analysis to both the design of experiments in biomedicine and the understanding of the results of those experiments.
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Chromatin Regulation
Chromatin is the “packaged” form of DNA in the nucleus and its regulation is central to transcription – creating the RNA copy of a DNA sequence. Chromatin helps assure that the DNA/RNA copy is precise – any deviation can result in stunted gene expression or proteins that no longer function properly. Chromatin dysregulation has been implicated in diseases ranging from immune diseases and neurological disorders to cancers.
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Computational Genomics and Sequencing
Computational genomics uses the power of computing, mathematics and statistics to study the genome, particularly DNA and RNA sequencing. Because deciphering the genome and gene function is essential to understanding basic biology at the molecular level, this analytical, data driven approach can help identify new targets for therapeutic and vaccine development.
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Epigenetics
Broadly defined, epigenetics is the study of hereditary changes in gene activity without changes in the genome or genetic code itself. These changes can be caused by environmental influences such as exposure to toxins, viral infections, and even diet. These influences work by altering the activation of certain genes, and the changes are passed on during cell division.
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Experimental Therapeutics
Experimental therapeutics is the science of turning the basic processes and mechanisms of human biology into new, more effective drugs and medical devices. One goal is to create more “personalized” therapeutics to better fit the biology of individual patients with higher efficacy, more specificity, and lower side effects.
Associated Faculty:
- Dario C. Altieri, M.D. >
- David W. Speicher, Ph.D. >
- Emmanuel Skordalakes, Ph.D. >
- Jessie Villanueva, Ph.D. >
- José R. Conejo-Garcia, M.D., Ph.D. >
- Louise C. Showe, Ph.D. >
- Luis J. Montaner, D.V.M., D.Phil. >
- Maureen Murphy, Ph.D. >
- Meenhard Herlyn, D.V.M., D.Sc. >
- Qihong Huang, M.D., Ph.D. >
- Ronen Marmorstein, Ph.D. >
Associated Technologies:
- A Method of Delivering Genes to the Central Nervous System >
- Bin1: A Novel Tumor Suppressor Protein >
- BRAF35: The DNA-Binding Component of The BRCA2 Complex >
- Cancer Therapeutics Based on Novel Cyclopamine Analogs >
- Design of Novel Molecules that Regulate Sirtuins >
- Design of Novel Molecules That Regulate Telomerase >
- Glycoprotein D Vaccine Adjuvant >
- Novel Method for Inducing Tissue Repair >
- Novel Mitotic Checkpoint Gene >
- Rabies Vaccine - PM Seed Stock >
- Rubella Vaccine >
- Small Molecule Inhibitors of MicroRNA miR21 >
- Suppression of Cell-Mediated Immunity by Down-regulation of Interleukin-12 >
- Therapeutic Applications of Interleukin-12 (IL-12) >
- Vaccine for Prevention of Rabies Infections in Humans >
- Vaccine for Prevention of Rabies Infections in Humans >
- Vaccine to Treat Melanoma >
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Gene Regulation
Gene expression is how information encoded within DNA becomes an active molecule, particularly a protein. The process is regulated at several points, and any disturbance in the pathway can result in the onset of a number of diseases, including cancer. Research into gene regulation is focused on determining how variations in DNA and gene expression result in disease, and uncovering the molecular mechanisms that control them.
Associated Faculty:
- David W. Speicher, Ph.D. >
- Frank J. Rauscher, III, Ph.D. >
- Harold C. Riethman, Ph.D. >
- Hui Hu, Ph.D. >
- Kazuko Nishikura, Ph.D. >
- Ken-ichi Noma, Ph.D. >
- Louise C. Showe, Ph.D. >
- Maureen Murphy, Ph.D. >
- Paul M. Lieberman, Ph.D. >
- Ramana V. Davuluri, Ph.D. >
- Ramin Shiekhattar, Ph.D. >
- Ronen Marmorstein, Ph.D. >
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Genomics, Functional
The new wealth of information about the human genome has led to a surge in the role of functional genomics, which seeks to uncover the function of newly discovered genes and their expressed proteins. Functional genomics explores the dynamic processes that regulate both genes and proteins.
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Kinase Signaling
Kinase signaling is a process that helps coordinate and amplify communications between cells; kinases are enzymes that add a phosphate group to macromolecules and alter their actions. While protein kinases are the largest group, other types of kinases work with carbohydrates, lipids and amino acids. Therapeutics that inhibit kinases are often used in cancer treatment.
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Molecular Origins of Disease
Nearly all diseases have a molecular as well as a genetic basis, which can often be found in a single molecule, usually a protein, which is either missing in the cell or is abnormal in some way.
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Protein Structure and Modeling
Determining the structure of proteins is the first step towards understanding their function. Wistar Institute researchers are currently working to create 3D molecular models of proteins, as well as detailed analyses of structural properties such as protein-ligand docking and protein-protein interaction.
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Proteomics
There are approximately 35,000 genes in the human genome that provide the code for at least ten times as many proteins. Proteomics seeks to identify and analyze the structure, function, and interactions of these tens of thousands of proteins expressed by our genes. Understanding how they work in the cell is essential to a greater understanding of virtually all biological processes.
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RNA Biology
RNA (ribonucleic acid) biology is the study of the function and structure of this important molecule, which is critical to gene expression and protein synthesis. Because RNA is at the heart of gene expression, it touches virtually all human genetic diseases, and plays a key role in gene regulation – approximately one-tenth of the human genome belongs to regulatory RNA.
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Signal Transduction
Signal transduction is the transfer of signals from outside the cell to the inside, which creates a cellular response. These signals are carried by receptors that span both sides of the cell membrane; an outside molecule binds to the receptor, alters its shape and sends a signal to the cell’s interior. Ultimately, this may result in changes to gene expression or the activity of various cellular enzymes.
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Systems and Integrative Biology
The related fields of systems and integrative biology seek to understand the wide range of biologically complex processes in an organism as well as the mechanisms underlying those processes. This approach to biology involves a number of scientific disciplines from biochemistry to cell biology–on a scale that can range from the molecular, cellular or tissue level to entire systems within the organism itself.
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Telomeres, Cancer and Aging
Telomeres, bits of repetitive DNA sequences on the tips of chromosomes, are important for maintaining the stability and integrity of our genetic code. During normal cell division, telomeres are shortened. In humans, this shortening process as well as the activation of an enzyme called telomerase has been closely linked to cancer and aging.
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